HL_7SYN_029
3D structure
- PDB id
- 7SYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGUUCAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYN_029 not in the Motif Atlas
- Geometric match to HL_2CZJ_007
- Geometric discrepancy: 0.2025
- The information below is about HL_2CZJ_007
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_23696.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 8
Unit IDs
7SYN|1|2|C|1460
7SYN|1|2|G|1461
7SYN|1|2|U|1462
7SYN|1|2|U|1463
7SYN|1|2|C|1464
7SYN|1|2|A|1465
7SYN|1|2|G|1466
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- uS2 (SA)
- Chain S
- eS17
- Chain d
- eS28
- Chain h
- Receptor for Activated C Kinase 1 (RACK1)
Coloring options: