HL_7SYO_007

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7SYO|1|2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_007 not in the Motif Atlas

Geometric match to HL_3TUP_001

Geometric discrepancy: 0.3937

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

7SYO|1|2|G|377
7SYO|1|2|U|378
7SYO|1|2|C|379
7SYO|1|2|G|380
7SYO|1|2|C|381
7SYO|1|2|C|382
7SYO|1|2|G|383
7SYO|1|2|U|384
7SYO|1|2|G|385
7SYO|1|2|C|386
7SYO|1|2|C|387

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17