HL_7SYO_012

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

7SYO|1|2|U|541, 7SYO|1|2|U|542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_012 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2738

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7SYO|1|2|C|539
7SYO|1|2|U|540
7SYO|1|2|U|541
7SYO|1|2|U|542
7SYO|1|2|C|543
7SYO|1|2|G|544

Current chains

Chain 2

18S rRNA

Nearby chains