HL_7SYO_018

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_018 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.3583

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7SYO|1|2|A|957
7SYO|1|2|G|958
7SYO|1|2|G|959
7SYO|1|2|U|960
7SYO|1|2|G|961
7SYO|1|2|A|962
7SYO|1|2|A|963
7SYO|1|2|A|964
7SYO|1|2|U|965
7SYO|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11