HL_7SYO_022

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGGAAACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_022 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3853

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7SYO|1|2|G|1140
7SYO|1|2|G|1141
7SYO|1|2|G|1142
7SYO|1|2|A|1143
7SYO|1|2|A|1144
7SYO|1|2|A|1145
7SYO|1|2|C|1146
7SYO|1|2|C|1147

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain W

eS21

Chain X

uS8

Chain b

eS26