HL_7SYO_030

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

7SYO|1|2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_030 not in the Motif Atlas

Geometric match to HL_4V88_219

Geometric discrepancy: 0.3579

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYO|1|2|A|1614
7SYO|1|2|U|1615
7SYO|1|2|U|1616
7SYO|1|2|G|1617
7SYO|1|2|C|1618
7SYO|1|2|A|1619
7SYO|1|2|A|1620
7SYO|1|2|U|1621
7SYO|1|2|U|1622
7SYO|1|2|A|1623
7SYO|1|2|U|1624
7SYO|1|2|U|1625

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13

Chain e

uS14