3D structure

PDB id
7SYP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
7SYP|1|2|C|450, 7SYP|1|2|G|451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7SYP_009 not in the Motif Atlas
Geometric match to HL_4V88_195
Geometric discrepancy: 0.1448
The information below is about HL_4V88_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7SYP|1|2|C|441
7SYP|1|2|C|442
7SYP|1|2|U|443
7SYP|1|2|G|444
7SYP|1|2|A|445
7SYP|1|2|G|446
7SYP|1|2|A|447
7SYP|1|2|A|448
7SYP|1|2|A|449
7SYP|1|2|C|450
7SYP|1|2|G|451
7SYP|1|2|G|452

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
eS4 (S4 X isoform)
Chain H
eS6
Chain J
eS8
Chain Z
eS24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0755 s