HL_7SYP_018

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYP_018 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.1381

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7SYP|1|2|A|957
7SYP|1|2|G|958
7SYP|1|2|G|959
7SYP|1|2|U|960
7SYP|1|2|G|961
7SYP|1|2|A|962
7SYP|1|2|A|963
7SYP|1|2|A|964
7SYP|1|2|U|965
7SYP|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain z

Internal ribosome entry site; IRES