HL_7SYP_023

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYP_023 not in the Motif Atlas

Geometric match to HL_5M0J_001

Geometric discrepancy: 0.1478

The information below is about HL_5M0J_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7SYP|1|2|U|1178
7SYP|1|2|G|1179
7SYP|1|2|C|1180
7SYP|1|2|A|1181
7SYP|1|2|A|1182
7SYP|1|2|A|1183

Current chains

Chain 2

18S rRNA

Nearby chains

Chain n

eL41