HL_7SYQ_028

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCCG

Length

4 nucleotides

Bulged bases

7SYQ|1|2|C|1423

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYQ_028 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1535

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7SYQ|1|2|C|1416
7SYQ|1|2|C|1417
7SYQ|1|2|C|1423
7SYQ|1|2|G|1424

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain U

eS19