HL_7SYQ_033

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGC

Length

4 nucleotides

Bulged bases

7SYQ|1|2|G|1771

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYQ_033 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2979

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7SYQ|1|2|G|1760
7SYQ|1|2|U|1761
7SYQ|1|2|G|1771
7SYQ|1|2|C|1772

Current chains

Chain 2

18S rRNA

Nearby chains