HL_7SYR_003

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7SYR|1|2|U|160, 7SYR|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYR_003 not in the Motif Atlas

Geometric match to HL_4V88_188

Geometric discrepancy: 0.1951

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7SYR|1|2|G|156
7SYR|1|2|U|157
7SYR|1|2|A|158
7SYR|1|2|A|159
7SYR|1|2|U|160
7SYR|1|2|U|161
7SYR|1|2|C|162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24