HL_7SYR_021
3D structure
- PDB id
- 7SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 7SYR|1|2|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYR_021 not in the Motif Atlas
- Geometric match to HL_4V88_208
- Geometric discrepancy: 0.1779
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
7SYR|1|2|G|1054
7SYR|1|2|A|1055
7SYR|1|2|U|1056
7SYR|1|2|C|1057
7SYR|1|2|A|1058
7SYR|1|2|G|1059
7SYR|1|2|A|1060
7SYR|1|2|U|1061
7SYR|1|2|A|1062
7SYR|1|2|C|1063
7SYR|1|2|C|1064
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain P
- uS11
- Chain i
- Transfer RNA; tRNA
- Chain j
- Eukaryotic translation initiation factor 2 subunit 1
- Chain z
- Internal ribosome entry site; IRES
Coloring options: