3D structure

PDB id
7SYR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
AUUCCCAU
Length
8 nucleotides
Bulged bases
7SYR|1|2|U|1114, 7SYR|1|2|U|1115
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7SYR_022 not in the Motif Atlas
Geometric match to HL_4GXY_003
Geometric discrepancy: 0.3972
The information below is about HL_4GXY_003
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_65794.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
14

Unit IDs

7SYR|1|2|A|1113
7SYR|1|2|U|1114
7SYR|1|2|U|1115
7SYR|1|2|C|1116
7SYR|1|2|C|1117
7SYR|1|2|C|1118
7SYR|1|2|A|1119
7SYR|1|2|U|1120

Current chains

Chain 2
18S rRNA

Nearby chains

Chain C
eS1
Chain c
eS27
Chain z
Internal ribosome entry site; IRES

Coloring options:


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