3D structure

PDB id
7SYR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
AUUGCAAUUAUU
Length
12 nucleotides
Bulged bases
7SYR|1|2|A|1623
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7SYR_032 not in the Motif Atlas
Geometric match to HL_4V88_219
Geometric discrepancy: 0.2219
The information below is about HL_4V88_219
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_03273.1
Basepair signature
cWW-F-F-tWH-F-F-F
Number of instances in this motif group
3

Unit IDs

7SYR|1|2|A|1614
7SYR|1|2|U|1615
7SYR|1|2|U|1616
7SYR|1|2|G|1617
7SYR|1|2|C|1618
7SYR|1|2|A|1619
7SYR|1|2|A|1620
7SYR|1|2|U|1621
7SYR|1|2|U|1622
7SYR|1|2|A|1623
7SYR|1|2|U|1624
7SYR|1|2|U|1625

Current chains

Chain 2
18S rRNA

Nearby chains

Chain Q
uS19
Chain T
uS13
Chain e
uS14

Coloring options:


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