HL_7SYS_009
3D structure
- PDB id
- 7SYS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 7SYS|1|2|C|450, 7SYS|1|2|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYS_009 not in the Motif Atlas
- Geometric match to HL_4V88_195
- Geometric discrepancy: 0.1299
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7SYS|1|2|C|441
7SYS|1|2|C|442
7SYS|1|2|U|443
7SYS|1|2|G|444
7SYS|1|2|A|445
7SYS|1|2|G|446
7SYS|1|2|A|447
7SYS|1|2|A|448
7SYS|1|2|A|449
7SYS|1|2|C|450
7SYS|1|2|G|451
7SYS|1|2|G|452
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- eS4 (S4 X isoform)
- Chain H
- eS6
- Chain J
- eS8
- Chain Z
- eS24
Coloring options: