HL_7SYT_007

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYT_007 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.1983

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYT|1|2|G|377
7SYT|1|2|U|378
7SYT|1|2|C|379
7SYT|1|2|G|380
7SYT|1|2|C|381
7SYT|1|2|C|382
7SYT|1|2|G|383
7SYT|1|2|U|384
7SYT|1|2|G|385
7SYT|1|2|C|386
7SYT|1|2|C|387

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17