HL_7SYT_008

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYT_008 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.1905

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYT|1|2|U|416
7SYT|1|2|C|417
7SYT|1|2|A|418
7SYT|1|2|G|419
7SYT|1|2|G|420
7SYT|1|2|G|421

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain K

uS4

Chain M

uS17

Chain X

uS8

Chain Y

uS12