HL_7SYT_009

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

7SYT|1|2|A|448, 7SYT|1|2|C|450, 7SYT|1|2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYT_009 not in the Motif Atlas

Geometric match to HL_4V88_195

Geometric discrepancy: 0.162

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYT|1|2|C|441
7SYT|1|2|C|442
7SYT|1|2|U|443
7SYT|1|2|G|444
7SYT|1|2|A|445
7SYT|1|2|G|446
7SYT|1|2|A|447
7SYT|1|2|A|448
7SYT|1|2|A|449
7SYT|1|2|C|450
7SYT|1|2|G|451
7SYT|1|2|G|452

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8