HL_7SYT_019
3D structure
- PDB id
- 7SYT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYT_019 not in the Motif Atlas
- Geometric match to HL_5J7L_015
- Geometric discrepancy: 0.2379
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
7SYT|1|2|A|957
7SYT|1|2|G|958
7SYT|1|2|G|959
7SYT|1|2|U|960
7SYT|1|2|G|961
7SYT|1|2|A|962
7SYT|1|2|A|963
7SYT|1|2|A|964
7SYT|1|2|U|965
7SYT|1|2|U|966
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain G
- uS7
- Chain P
- uS11
- Chain d
- eS28
- Chain z
- Internal ribosome entry site; IRES
Coloring options: