HL_7SYU_019
3D structure
- PDB id
- 7SYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYU_019 not in the Motif Atlas
- Geometric match to HL_4V88_206
- Geometric discrepancy: 0.2187
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
7SYU|1|2|A|957
7SYU|1|2|G|958
7SYU|1|2|G|959
7SYU|1|2|U|960
7SYU|1|2|G|961
7SYU|1|2|A|962
7SYU|1|2|A|963
7SYU|1|2|A|964
7SYU|1|2|U|965
7SYU|1|2|U|966
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain G
- uS7
- Chain P
- uS11
- Chain d
- eS28
- Chain z
- Internal ribosome entry site; IRES
Coloring options: