HL_7SYU_021

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7SYU|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYU_021 not in the Motif Atlas

Geometric match to HL_4V88_208

Geometric discrepancy: 0.1844

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7SYU|1|2|G|1054
7SYU|1|2|A|1055
7SYU|1|2|U|1056
7SYU|1|2|C|1057
7SYU|1|2|A|1058
7SYU|1|2|G|1059
7SYU|1|2|A|1060
7SYU|1|2|U|1061
7SYU|1|2|A|1062
7SYU|1|2|C|1063
7SYU|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain i

Transfer RNA; tRNA

Chain z

Internal ribosome entry site; IRES