HL_7SYV_010

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7SYV|1|2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYV_010 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.135

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7SYV|1|2|C|462
7SYV|1|2|C|463
7SYV|1|2|A|464
7SYV|1|2|A|465
7SYV|1|2|G|466
7SYV|1|2|G|467

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain x

Eukaryotic translation initiation factor 5B