RNA 3D Hub //

7SYV Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7SYV_0011/2/7:17No text annotation
geometric
HL_4V88_186
NA
HL_7SYV_0021/2/69:80No text annotation
geometric
HL_361D_002
NA
HL_7SYV_0031/2/156:162No text annotation
geometric
HL_7A0S_011
HL_75660.7
HL_7SYV_0051/2/288:295No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_7SYV_0071/2/377:387tRNA D-loop
geometric
HL_6UFM_001
HL_04642.3
HL_7SYV_0081/2/416:421No text annotation
geometric
HL_4V88_194
NA
HL_7SYV_0091/2/441:452No text annotation
geometric
HL_4V88_195
NA
HL_7SYV_0101/2/462:467UNCG
geometric
HL_4LFB_009
HL_61337.3
HL_7SYV_0111/2/498:504No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_7SYV_0131/2/569:581No text annotation
geometric
HL_4V88_199
NA
HL_7SYV_0141/2/618:623GNRA variation
geometric
HL_4V88_200
NA
HL_7SYV_0151/2/820:828No text annotation
geometric
HL_4V88_203
NA
HL_7SYV_0181/2/957:966No text annotation
geometric
HL_4V88_206
NA
HL_7SYV_0191/2/994:999No text annotation
geometric
HL_5U3G_001
HL_75660.7
HL_7SYV_0201/2/1054:1064No text annotation
geometric
HL_5J7L_017
NA
HL_7SYV_0211/2/1113:1120No text annotation
HL_7SYV_0221/2/1141:1146GNRA
geometric
HL_4V88_210
NA
HL_7SYV_0231/2/1178:1183GNRA
geometric
HL_6N2V_002
HL_34789.4
HL_7SYV_0241/2/1245:1254No text annotation
geometric
HL_5J7L_143
NA
HL_7SYV_0261/2/1353:1358GNRA
geometric
HL_4LFB_028
HL_34789.4
HL_7SYV_0271/2/1366:1373No text annotation
geometric
HL_4V88_215
NA
HL_7SYV_0291/2/1460:1466GNRA
geometric
HL_4V88_217
NA
HL_7SYV_0301/2/1565:1570GNRA
geometric
HL_4WF9_015
HL_34789.4
HL_7SYV_0311/2/1614:1625No text annotation
geometric
HL_4V88_219
NA
HL_7SYV_0321/2/1658:1666No text annotation
geometric
HL_4V88_220
NA
HL_7SYV_0341/2/1847:1852GNRA variation
geometric
HL_4V88_222
NA
HL_7SYV_0361/i/30:38tRNA anticodon loop
geometric
HL_7U2I_104
NA
HL_7SYV_0381/z/79:87No text annotation
HL_7SYV_0441/z/294:299No text annotation
HL_7SYV_0451/z/304:313No text annotation

Problematic loops

#loop idProblemSequence
HL_7SYV_046No text annotation
HL_7SYV_004No text annotation
HL_7SYV_006No text annotation
HL_7SYV_012No text annotation
HL_7SYV_016No text annotation
HL_7SYV_017No text annotation
HL_7SYV_025Anticodon loop related
HL_7SYV_028No text annotation
HL_7SYV_033No text annotation
HL_7SYV_047No text annotation
HL_7SYV_035tRNA D-loop
HL_7SYV_037T-loop with 2 stacked bulged bases
HL_7SYV_039No text annotation
HL_7SYV_040No text annotation
HL_7SYV_041No text annotation
HL_7SYV_042No text annotation
HL_7SYV_043No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7SYV_0011/2/23:25,
1/2/649:651		Isolated non-canonical cWW pair
geometric
IL_4M4O_001
IL_01003.3
IL_7SYV_0021/2/34:36,
1/2/519:521		Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.3
IL_7SYV_0031/2/37:40,
1/2/514:518		Double sheared
geometric
IL_4WF9_016
IL_58355.2
IL_7SYV_0041/2/41:47,
1/2/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_7SYV_0051/2/49:51,
1/2/476:477		Minor groove platform
geometric
IL_4V88_388
NA
IL_7SYV_0061/2/56:62,
1/2/86:89		Other IL
geometric
IL_5TBW_043
NA
IL_7SYV_0071/2/63:68,
1/2/81:85		No text annotation
geometric
IL_4V88_390
NA
IL_7SYV_0081/2/108:110,
1/2/351:353		Isolated non-canonical cWW pair
geometric
IL_1KFO_002
NA
IL_7SYV_0961/2/108:112,
1/2/349:353		Partly complementary
geometric
IL_8D29_010
IL_71154.3
IL_7SYV_0091/2/110:112,
1/2/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.3
IL_7SYV_0101/2/112:115,
1/2/348:349		Multiple bulged bases
geometric
IL_5WLH_001
IL_71421.2
IL_7SYV_0111/2/116:121,
1/2/343:347		No text annotation
geometric
IL_4V88_393
NA
IL_7SYV_0131/2/145:151,
1/2/167:174		tWH-tWH-tHW-tHW
geometric
IL_4V88_394
NA
IL_7SYV_0151/2/188:192,
1/2/207:211		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_7SYV_0161/2/216:219,
1/2/302:309		No text annotation
IL_7SYV_0181/2/312:314,
1/2/336:337		Single bulged A
geometric
IL_4V88_399
NA
IL_7SYV_0191/2/317:319,
1/2/332:333		Single stack bend
geometric
IL_5TBW_009
NA
IL_7SYV_0211/2/359:364,
1/2/396:403		Kink-turn with non-sequential stacking
geometric
IL_5J7L_014
NA
IL_7SYV_0221/2/366:373,
1/2/391:394		No text annotation
IL_7SYV_0231/2/411:413,
1/2/424:429		No text annotation
geometric
IL_4V88_404
NA
IL_7SYV_0241/2/437:439,
1/2/454:456		Isolated non-canonical cWW pair
geometric
IL_7A0S_014
IL_01003.3
IL_7SYV_0251/2/459:461,
1/2/468:470		Isolated near basepair
geometric
IL_3NJ7_004
IL_42997.5
IL_7SYV_0261/2/487:489,
1/2/511:512		Single bulged U
geometric
IL_4LFB_014
IL_97561.3
IL_7SYV_0271/2/491:495,
1/2/508:509		C-loop
geometric
IL_5J7L_018
NA
IL_7SYV_0281/2/495:496,
1/2/506:508		Single bulged G
geometric
IL_5J7L_019
NA
IL_7SYV_0301/2/563:565,
1/2/585:592		No text annotation
homologous
IL_8C3A_420
NA
IL_7SYV_0311/2/566:569,
1/2/581:584		Tandem non-canonical cWW pairs
geometric
IL_5C5W_003
NA
IL_7SYV_0321/2/599:608,
1/2/635:637		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_7SYV_0331/2/611:617,
1/2/624:632		Kink-turn related
geometric
IL_4V88_415
NA
IL_7SYV_0341/2/663:665,
1/2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.3
IL_7SYV_0351/2/665:671,
1/2/1161:1162		No text annotation
geometric
IL_6CZR_134
NA
IL_7SYV_0361/2/673:675,
1/2/1030:1032		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
NA
IL_7SYV_0371/2/676:682,
1/2/1023:1029		No text annotation
IL_7SYV_1101/2/802:803,
1/2/860:863		No text annotation
homologous
IL_8P9A_412
IL_73108.2
IL_7SYV_0411/2/805:807,
1/2/856:858		Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_01003.3
IL_7SYV_0421/2/807:815,
1/2/849:856		No text annotation
geometric
IL_4V88_425
NA
IL_7SYV_0451/2/922:923,
1/2/1019:1022		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_7SYV_1111/2/925:926,
1/2/1015:1017		Single bulged U
geometric
IL_7KVT_002
IL_97561.3
IL_7SYV_0471/2/927:931,
1/2/1010:1014		No text annotation
geometric
IL_5TBW_121
NA
IL_7SYV_0481/2/931:935,
1/2/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7SYV_0491/2/942:945,
1/2/981:984		Tandem non-canonical cWW pairs
geometric
IL_4V88_432
NA
IL_7SYV_0501/2/952:956,
1/2/967:974		Kink-turn
geometric
IL_4V88_434
NA
IL_7SYV_0511/2/1041:1047,
1/2/1071:1074		No text annotation
IL_7SYV_0521/2/1047:1051,
1/2/1067:1071		tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_7SYV_0531/2/1091:1093,
1/2/1152:1158		No text annotation
geometric
IL_4V88_437
NA
IL_7SYV_0541/2/1098:1101,
1/2/1131:1134		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_7SYV_1011/2/1098:1103,
1/2/1129:1134		No text annotation
geometric
IL_6O5F_001
NA
IL_7SYV_0551/2/1101:1103,
1/2/1129:1131		Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_01003.3
IL_7SYV_0561/2/1108:1110,
1/2/1123:1124		Minor groove platform
geometric
IL_4V88_412
NA
IL_7SYV_0571/2/1168:1175,
1/2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4LFB_034
IL_84044.1
IL_7SYV_0581/2/1214:1217,
1/2/1681:1685		C-loop
geometric
IL_4V88_443
NA
IL_7SYV_0591/2/1230:1232,
1/2/1526:1528		Isolated non-canonical cWW pair
geometric
IL_4V88_444
NA
IL_7SYV_0601/2/1235:1236,
1/2/1521:1523		Minor groove platform
geometric
IL_4V88_445
NA
IL_7SYV_0631/2/1325:1327,
1/2/1502:1503		Single bulged U
geometric
IL_4V88_449
NA
IL_7SYV_0641/2/1329:1335,
1/2/1492:1500		No text annotation
homologous
IL_8P9A_439
IL_99893.1
IL_7SYV_0651/2/1337:1338,
1/2/1488:1490		Single bulged A
geometric
IL_4WF9_006
IL_14190.2
IL_7SYV_0661/2/1347:1349,
1/2/1380:1382		Isolated cWH basepair
geometric
IL_4WF9_045
IL_10892.2
IL_7SYV_0671/2/1363:1365,
1/2/1374:1375		Minor groove platform
geometric
IL_6DLR_003
IL_34520.3
IL_7SYV_0681/2/1395:1399,
1/2/1447:1450		No text annotation
geometric
IL_1CSL_001
IL_59580.1
IL_7SYV_0691/2/1402:1405,
1/2/1441:1444		Minor groove platform
geometric
IL_4V88_456
NA
IL_7SYV_0711/2/1537:1539,
1/2/1594:1596		Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_01003.3
IL_7SYV_1041/2/1541:1550,
1/2/1582:1592		No text annotation
IL_7SYV_0721/2/1550:1558,
1/2/1577:1582		180 degree turn
geometric
IL_4LFB_052
IL_08849.1
IL_7SYV_0731/2/1560:1563,
1/2/1572:1575		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_15225.2
IL_7SYV_0741/2/1604:1610,
1/2/1629:1635		No text annotation
homologous
IL_8C3A_469
NA
IL_7SYV_0751/2/1702:1705,
1/2/1829:1833		No text annotation
geometric
IL_4V88_464
NA
IL_7SYV_0761/2/1706:1708,
1/2/1826:1828		Isolated non-canonical cWW pair
geometric
IL_5VCI_002
IL_01003.3
IL_7SYV_0771/2/1708:1711,
1/2/1822:1826		No text annotation
homologous
IL_8CRE_469
IL_73099.1
IL_7SYV_0781/2/1714:1716,
1/2/1817:1819		Isolated non-canonical cWW pair
geometric
IL_4V88_467
NA
IL_7SYV_0791/2/1717:1720,
1/2/1813:1816		Double sheared
geometric
IL_4LFB_060
IL_58355.2
IL_7SYV_0811/2/1729:1731,
1/2/1803:1805		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_7SYV_0821/2/1733:1736,
1/2/1798:1801		Double sheared
geometric
IL_4V88_471
NA
IL_7SYV_0831/2/1739:1741,
1/2/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_01003.3
IL_7SYV_0841/2/1742:1746,
1/2/1788:1792		Triple sheared
geometric
IL_7RQB_075
NA
IL_7SYV_0911/z/67:69,
1/z/98:100		No text annotation
IL_7SYV_0921/z/70:75,
1/z/91:97		No text annotation
IL_7SYV_1081/z/135:137,
1/z/287:289		No text annotation

Problematic loops

#loop idProblemSequence
IL_7SYV_012No text annotation
IL_7SYV_109No text annotation
IL_7SYV_014Tandem non-canonical cWW pairs
IL_7SYV_017No text annotation
IL_7SYV_020Single stack bend
IL_7SYV_029No text annotation
IL_7SYV_097No text annotation
IL_7SYV_038No text annotation
IL_7SYV_039No text annotation
IL_7SYV_0408-nt loop receptor
IL_7SYV_098No text annotation
IL_7SYV_043Isolated non-canonical cWW pair
IL_7SYV_044Isolated non-canonical cWW pair
IL_7SYV_099Isolated non-canonical cWW pair
IL_7SYV_046Tandem non-canonical cWW pairs
IL_7SYV_100Kink-turn
IL_7SYV_061No text annotation
IL_7SYV_112No text annotation
IL_7SYV_062No text annotation
IL_7SYV_102No text annotation
IL_7SYV_113No text annotation
IL_7SYV_114No text annotation
IL_7SYV_103No text annotation
IL_7SYV_070Single bulged G
IL_7SYV_105Partly complementary
IL_7SYV_080Single bulged U
IL_7SYV_106No text annotation
IL_7SYV_085No text annotation
IL_7SYV_115No text annotation
IL_7SYV_086No text annotation
IL_7SYV_107No text annotation
IL_7SYV_087No text annotation
IL_7SYV_088No text annotation
IL_7SYV_089No text annotation
IL_7SYV_090No text annotation
IL_7SYV_093No text annotation
IL_7SYV_094No text annotation
IL_7SYV_095No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7SYV_0011/2/40:41,
1/2/481:487,
1/2/512:514		No text annotation
homologous
J3_8P9A_068
J3_58657.1
J3_7SYV_0171/2/682:684,
1/2/918:922,
1/2/1022:1023		No text annotation
geometric
J3_8P9A_071
J3_01633.1
J3_7SYV_0181/2/682:684,
1/2/918:923,
1/2/1019:1023		No text annotation
homologous
J3_8P9A_072
J3_17385.5
J3_7SYV_0031/2/816:819,
1/2/829:831,
1/2/843:848		No text annotation
homologous
J3_8C3A_035
NA
J3_7SYV_0041/2/938:941,
1/2/985:993,
1/2/1000:1004		No text annotation
homologous
J3_8P9A_074
J3_23895.1
J3_7SYV_0051/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151		No text annotation
J3_7SYV_0061/2/1218:1221,
1/2/1645:1651,
1/2/1673:1680		No text annotation
homologous
J3_8C3A_038
NA
J3_7SYV_0071/2/1225:1228,
1/2/1530:1532,
1/2/1638:1641		No text annotation
homologous
J3_8C3A_039
NA
J3_7SYV_0081/2/1237:1245,
1/2/1254:1266,
1/2/1516:1520		No text annotation
J3_7SYV_0091/2/1273:1277,
1/2/1320:1324,
1/2/1504:1510		No text annotation
homologous
J3_8C3A_041
NA
J3_7SYV_0101/2/1340:1345,
1/2/1384:1389,
1/2/1481:1486		No text annotation
homologous
J3_8P9A_080
J3_17077.1
J3_7SYV_0151/2/1350:1352,
1/2/1359:1363,
1/2/1375:1379		No text annotation
J3_7SYV_0161/2/1391:1395,
1/2/1450:1456,
1/2/1470:1479		No text annotation
J3_7SYV_0121/2/1532:1536,
1/2/1597:1604,
1/2/1635:1638		No text annotation
homologous
J3_8C3A_044
NA
J4_7SYV_0011/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432		No text annotation
homologous
J4_8C3A_021
NA
J4_7SYV_0021/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_14595.1
J4_7SYV_0031/i/7:10,
1/i/24:26,
1/i/42:48,
1/i/64:65		tRNA junction
homologous
J4_6JXM_001
J4_95067.1
J4_7SYV_0071/z/133:134,
1/z/290:291,
1/z/302:303,
1/z/314:315		No text annotation
J4_7SYV_0041/z/133:135,
1/z/289:291,
1/z/302:303,
1/z/314:315		No text annotation
J5_7SYV_0011/2/30:34,
1/2/521:532,
1/2/552:563,
1/2/592:595,
1/2/641:644		No text annotation
J5_7SYV_0021/2/30:34,
1/2/521:532,
1/2/552:565,
1/2/585:595,
1/2/641:644		No text annotation
J5_7SYV_0031/2/53:62,
1/2/86:96,
1/2/434:436,
1/2/457:459,
1/2/470:474		No text annotation
J5_7SYV_0051/2/123:129,
1/2/183:185,
1/2/214:215,
1/2/310:312,
1/2/337:341		No text annotation

Problematic loops

#loop idProblemSequence
J3_7SYV_002No text annotation
J3_7SYV_013No text annotation
J3_7SYV_014No text annotation
J3_7SYV_011No text annotation
J4_7SYV_005No text annotation
J4_7SYV_006No text annotation
J5_7SYV_004No text annotation

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