HL_7SYV_011

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7SYV|1|2|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYV_011 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1891

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7SYV|1|2|C|498
7SYV|1|2|G|499
7SYV|1|2|A|500
7SYV|1|2|C|501
7SYV|1|2|C|502
7SYV|1|2|C|503
7SYV|1|2|G|504

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain Z

40S ribosomal protein S24