HL_7SYV_013

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYV_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2402

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYV|1|2|A|569
7SYV|1|2|C|570
7SYV|1|2|U|571
7SYV|1|2|U|572
7SYV|1|2|U|573
7SYV|1|2|A|574
7SYV|1|2|A|575
7SYV|1|2|A|576
7SYV|1|2|U|577
7SYV|1|2|C|578
7SYV|1|2|C|579
7SYV|1|2|U|580
7SYV|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

40S ribosomal protein S24