HL_7SYV_015

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

7SYV|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYV_015 not in the Motif Atlas

Geometric match to HL_4V88_203

Geometric discrepancy: 0.1546

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7SYV|1|2|U|820
7SYV|1|2|G|821
7SYV|1|2|U|822
7SYV|1|2|U|823
7SYV|1|2|C|824
7SYV|1|2|A|825
7SYV|1|2|A|826
7SYV|1|2|A|827
7SYV|1|2|G|828

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

uS4

Chain Z

40S ribosomal protein S24