HL_7SYV_029
3D structure
- PDB id
- 7SYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUUCAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYV_029 not in the Motif Atlas
- Geometric match to HL_4V88_217
- Geometric discrepancy: 0.3762
- The information below is about HL_4V88_217
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
7SYV|1|2|C|1460
7SYV|1|2|G|1461
7SYV|1|2|U|1462
7SYV|1|2|U|1463
7SYV|1|2|C|1464
7SYV|1|2|A|1465
7SYV|1|2|G|1466
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein SA
- Chain S
- eS17
- Chain d
- eS28
- Chain h
- RACK1
- Chain z
- Internal ribosome entry site; IRES
Coloring options: