HL_7SYW_026

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7SYW|1|2|U|1300, 7SYW|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYW_026 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.5347

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7SYW|1|2|A|1295
7SYW|1|2|U|1296
7SYW|1|2|U|1297
7SYW|1|2|G|1298
7SYW|1|2|A|1299
7SYW|1|2|U|1300
7SYW|1|2|A|1301
7SYW|1|2|G|1302
7SYW|1|2|C|1303
7SYW|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a