HL_7SYW_029

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCG

Length

4 nucleotides

Bulged bases

7SYW|1|2|C|1423

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYW_029 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.1916

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

7SYW|1|2|C|1416
7SYW|1|2|C|1417
7SYW|1|2|C|1423
7SYW|1|2|G|1424

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain U

eS19