HL_7SYX_008

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYX_008 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.175

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYX|1|2|U|416
7SYX|1|2|C|417
7SYX|1|2|A|418
7SYX|1|2|G|419
7SYX|1|2|G|420
7SYX|1|2|G|421

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain K

uS4

Chain M

uS17

Chain X

uS8