HL_7SYX_029

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCG

Length

4 nucleotides

Bulged bases

7SYX|1|2|C|1423

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYX_029 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.134

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7SYX|1|2|C|1416
7SYX|1|2|C|1417
7SYX|1|2|C|1423
7SYX|1|2|G|1424

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain U

eS19