HL_7TM3_026

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7TM3|1|K|C|1676, 7TM3|1|K|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_026 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0751

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7TM3|1|K|C|1675
7TM3|1|K|C|1676
7TM3|1|K|U|1677
7TM3|1|K|C|1678
7TM3|1|K|A|1679
7TM3|1|K|G|1680

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L27a

Chain b

eL29

Chain o

eL42