HL_7TM3_035

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7TM3|1|K|G|2421, 7TM3|1|K|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_035 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2071

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7TM3|1|K|A|2420
7TM3|1|K|G|2421
7TM3|1|K|C|2422
7TM3|1|K|A|2423
7TM3|1|K|G|2424
7TM3|1|K|U|2425
7TM3|1|K|U|2426

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

Ribosomal protein L19

Chain l

eL39