HL_7TM3_047

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7TM3|1|K|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_047 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.0845

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

7TM3|1|K|C|2872
7TM3|1|K|U|2873
7TM3|1|K|U|2874
7TM3|1|K|C|2875
7TM3|1|K|G|2876
7TM3|1|K|G|2877

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain n

eL41

Chain p

eL43