HL_7TM3_081
3D structure
- PDB id
- 7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.25 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7TM3|1|v|A|82, 7TM3|1|v|U|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TM3_081 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5613
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7TM3|1|v|G|68
7TM3|1|v|U|69
7TM3|1|v|G|70
7TM3|1|v|A|71
7TM3|1|v|A|72
7TM3|1|v|U|73
7TM3|1|v|U|74
7TM3|1|v|G|75
7TM3|1|v|C|76
7TM3|1|v|A|77
7TM3|1|v|G|78
7TM3|1|v|G|79
7TM3|1|v|A|80
7TM3|1|v|C|81
7TM3|1|v|A|82
7TM3|1|v|C|83
7TM3|1|v|A|84
7TM3|1|v|U|85
7TM3|1|v|U|86
7TM3|1|v|G|87
7TM3|1|v|A|88
7TM3|1|v|U|89
7TM3|1|v|C|90
Current chains
- Chain v
- 5.8S ribosomal RNA
Nearby chains
- Chain 3
- Sec61G
- Chain 6
- Transmembrane protein 147
- Chain B
- Nascent chain
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- uL24
- Chain h
- eL35
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
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