HL_7TOO_004

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

7TOO|1|A25S|U|133, 7TOO|1|A25S|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.1711

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

7TOO|1|A25S|C|132
7TOO|1|A25S|U|133
7TOO|1|A25S|U|134
7TOO|1|A25S|C|135
7TOO|1|A25S|G|136

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL15

60S ribosomal protein L15-A

Chain AL35

60S ribosomal protein L35-A