HL_7TOO_018

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCUUC

Length

6 nucleotides

Bulged bases

7TOO|1|A25S|C|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_018 not in the Motif Atlas

Homologous match to HL_8C3A_018

Geometric discrepancy: 0.1864

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

7TOO|1|A25S|G|763
7TOO|1|A25S|U|764
7TOO|1|A25S|C|765
7TOO|1|A25S|U|766
7TOO|1|A25S|U|767
7TOO|1|A25S|C|768

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL13

60S ribosomal protein L13-A