HL_7TOO_022

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7TOO|1|A25S|C|959, 7TOO|1|A25S|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2528

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7TOO|1|A25S|C|958
7TOO|1|A25S|C|959
7TOO|1|A25S|U|960
7TOO|1|A25S|C|961
7TOO|1|A25S|A|962
7TOO|1|A25S|G|963

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL28

60S ribosomal protein L28

Chain AL29

RPL29 isoform 1

Chain AL42

60S ribosomal protein L42-A