HL_7TOO_024

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_024 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.1184

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7TOO|1|A25S|C|1076
7TOO|1|A25S|U|1077
7TOO|1|A25S|U|1078
7TOO|1|A25S|A|1079
7TOO|1|A25S|A|1080
7TOO|1|A25S|U|1081
7TOO|1|A25S|U|1082
7TOO|1|A25S|G|1083

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL05

RPL5 isoform 1

Chain AL21

60S ribosomal protein L21-A

Chain AL29

RPL29 isoform 1