HL_7TOO_026

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

7TOO|1|A25S|A|1153, 7TOO|1|A25S|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_026 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.1427

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOO|1|A25S|G|1148
7TOO|1|A25S|G|1149
7TOO|1|A25S|A|1150
7TOO|1|A25S|U|1151
7TOO|1|A25S|G|1152
7TOO|1|A25S|A|1153
7TOO|1|A25S|A|1154
7TOO|1|A25S|C|1155

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL07

60S ribosomal protein L7-A

Chain AL32

RPL32 isoform 1

Chain AL33

60S ribosomal protein L33-A