3D structure

PDB id
7TOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CAUGGAAGUCG
Length
11 nucleotides
Bulged bases
7TOO|1|A25S|A|1245
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7TOO_027 not in the Motif Atlas
Homologous match to HL_8C3A_027
Geometric discrepancy: 0.406
The information below is about HL_8C3A_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19210.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

7TOO|1|A25S|C|1239
7TOO|1|A25S|A|1240
7TOO|1|A25S|U|1241
7TOO|1|A25S|G|1242
7TOO|1|A25S|G|1243
7TOO|1|A25S|A|1244
7TOO|1|A25S|A|1245
7TOO|1|A25S|G|1246
7TOO|1|A25S|U|1247
7TOO|1|A25S|C|1248
7TOO|1|A25S|G|1249

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL12
Ribosomal protein L12

Coloring options:


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