HL_7TOO_039

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

7TOO|1|A25S|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_039 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.306

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7TOO|1|A25S|C|1759
7TOO|1|A25S|A|1760
7TOO|1|A25S|C|1761
7TOO|1|A25S|C|1762
7TOO|1|A25S|U|1763
7TOO|1|A25S|U|1764
7TOO|1|A25S|U|1765
7TOO|1|A25S|G|1766

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19-A

Chain AL22

60S ribosomal protein L22-A