HL_7TOO_064

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_064 not in the Motif Atlas

Geometric match to HL_4WF9_058

Geometric discrepancy: 0.1237

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7TOO|1|A25S|U|2920
7TOO|1|A25S|U|2921
7TOO|1|A25S|G|2922
7TOO|1|A25S|U|2923
7TOO|1|A25S|U|2924
7TOO|1|A25S|C|2925
7TOO|1|A25S|A|2926

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1