HL_7TOO_070

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

7TOO|1|A25S|A|3243, 7TOO|1|A25S|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_070 not in the Motif Atlas

Geometric match to HL_5TBW_069

Geometric discrepancy: 0.1164

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOO|1|A25S|C|3240
7TOO|1|A25S|G|3241
7TOO|1|A25S|G|3242
7TOO|1|A25S|A|3243
7TOO|1|A25S|A|3244
7TOO|1|A25S|A|3245
7TOO|1|A25S|G|3246
7TOO|1|A25S|G|3247

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL16

60S ribosomal protein L16-A