HL_7TOO_078

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

7TOO|1|APTN|C|16, 7TOO|1|APTN|G|18, 7TOO|1|APTN|G|19, 7TOO|1|APTN|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_078 not in the Motif Atlas

Geometric match to HL_1J1U_001

Geometric discrepancy: 0.1944

The information below is about HL_1J1U_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

7TOO|1|APTN|C|13
7TOO|1|APTN|A|14
7TOO|1|APTN|G|15
7TOO|1|APTN|C|16
7TOO|1|APTN|C|17
7TOO|1|APTN|U|17|||A
7TOO|1|APTN|G|18
7TOO|1|APTN|G|19
7TOO|1|APTN|U|20
7TOO|1|APTN|A|21
7TOO|1|APTN|G|22

Current chains

Chain APTN

tRNAfMet

Nearby chains

Chain A25S

Large subunit ribosomal RNA; LSU rRNA