3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CAUAG
Length
5 nucleotides
Bulged bases
7TOP|1|A25S|U|210, 7TOP|1|A25S|A|211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7TOP_006 not in the Motif Atlas
Homologous match to HL_8C3A_006
Geometric discrepancy: 0.1429
The information below is about HL_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

7TOP|1|A25S|C|208
7TOP|1|A25S|A|209
7TOP|1|A25S|U|210
7TOP|1|A25S|A|211
7TOP|1|A25S|G|212

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL04
RPL4A isoform 1
Chain AL26
60S ribosomal protein L26-A

Coloring options:


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