HL_7TOP_013

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_013 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.1391

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7TOP|1|A25S|C|599
7TOP|1|A25S|G|600
7TOP|1|A25S|U|601
7TOP|1|A25S|A|602
7TOP|1|A25S|A|603
7TOP|1|A25S|G|604

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL04

RPL4A isoform 1

Chain AL07

60S ribosomal protein L7-A