HL_7TOP_023

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUCU

Length

5 nucleotides

Bulged bases

7TOP|1|A25S|G|1021, 7TOP|1|A25S|U|1022

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_023 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3565

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7TOP|1|A25S|G|1020
7TOP|1|A25S|G|1021
7TOP|1|A25S|U|1022
7TOP|1|A25S|C|1032
7TOP|1|A25S|U|1033

Current chains

Chain A25S

25S rRNA

Nearby chains