HL_7TOP_027

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7TOP|1|A25S|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_027 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.5228

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7TOP|1|A25S|C|1239
7TOP|1|A25S|A|1240
7TOP|1|A25S|U|1241
7TOP|1|A25S|G|1242
7TOP|1|A25S|G|1243
7TOP|1|A25S|A|1244
7TOP|1|A25S|A|1245
7TOP|1|A25S|G|1246
7TOP|1|A25S|U|1247
7TOP|1|A25S|C|1248
7TOP|1|A25S|G|1249

Current chains

Chain A25S

25S rRNA

Nearby chains